Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs66712197 chr14:74418588 G/A 4.63E-6 173 25.17 29.7 10.43 KM Plot
PCPG rs66715932 chr17:50333704 T/G 0.000426 170 24.82 30.93 17.4 KM Plot
PCPG rs6675851 chr1:243787494 G/A 0.000229 174 25.4 25.53 18.35 KM Plot
PCPG rs66781959 chr14:74510612 G/A 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs66798475 chr17:50271048 G/A 4.36E-5 174 25.53 29.7 14.43 KM Plot
PCPG rs66815943 chr17:50333646 G/A 0.00028 170 26.12 28.38 16.33 KM Plot
PCPG rs6687226 chr1:161891556 G/T 3.69E-11 178 24.62 27.33 10.3 KM Plot
PCPG rs66896899 chr14:74480794 G/C 3.72E-7 178 25.28 28.38 7.4 KM Plot
PCPG rs669009 chr6:150387302 A/T 1.01E-6 171 1.83 24.53 26.57 KM Plot
PCPG rs66932813 chr15:43088622 T/G 2.99E-14 176 25.4 24.85 3.17 KM Plot
PCPG rs6693526 chr1:56349764 G/A 2.18E-5 172 25.53 27.43 13.27 KM Plot
PCPG rs66935820 chr12:21639194 T/C 2.7E-8 174 25.28 26.47 2.28 KM Plot
PCPG rs66947001 chr15:43109142 AT/A 2.3E-14 177 25.47 24.85 3.17 KM Plot
PCPG rs66955360 chr16:71467755 GGAGGCT/G 0.000139 175 24.53 27.22 43.12 KM Plot
PCPG rs66963912 chr12:113579006 T/G 0.000265 172 25.17 24.5 39.12 KM Plot